Detailed information of SNP:
|
SNP ID:
sf1105688712(Gbrowse)
Chromosome: chr11 Position: 5688712 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1379 | 63.09% | 36.91% |
| All Indica | 764 | 42.80% | 57.20% |
| All Japonica | 496 | 98.39% | 1.61% |
| Aus | 64 | 20.31% | 79.69% |
| Indica I | 361 | 15.79% | 84.21% |
| Indica II | 200 | 83.50% | 16.50% |
| Indica Intermediate | 203 | 50.74% | 49.26% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 92.47% | 7.53% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1105688712 | C->T | INTERGENIC | None |