Detailed information of SNP:
|
SNP ID:
sf1105736370(Gbrowse)
Chromosome: chr11 Position: 5736370 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1414 | 91.73% | 8.27% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 492 | 77.85% | 22.15% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 334 | 86.23% | 13.77% |
| Tropical Japonica | 90 | 60.00% | 40.00% |
| Japonica Intermediate | 68 | 60.29% | 39.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1105736370 | A->G | LOC_Os11g10500(LOC_Os11g10500.1) | Synonymous |