Detailed information of SNP:
|
SNP ID:
sf1105745477(Gbrowse)
Chromosome: chr11 Position: 5745477 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1410 | 55.74% | 44.26% |
| All Indica | 793 | 34.93% | 65.07% |
| All Japonica | 496 | 94.35% | 5.65% |
| Aus | 66 | 4.55% | 95.45% |
| Indica I | 373 | 15.82% | 84.18% |
| Indica II | 212 | 57.55% | 42.45% |
| Indica Intermediate | 208 | 46.15% | 53.85% |
| Temperate Japonica | 335 | 95.82% | 4.18% |
| Tropical Japonica | 93 | 92.47% | 7.53% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1105745477 | G->A | INTERGENIC | None |