Detailed information of SNP:
|
SNP ID:
sf1105746733(Gbrowse)
Chromosome: chr11 Position: 5746733 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 69.30% | 30.70% |
| All Indica | 797 | 89.96% | 10.04% |
| All Japonica | 497 | 30.18% | 69.82% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 85.29% | 14.71% |
| Indica II | 212 | 97.17% | 2.83% |
| Indica Intermediate | 211 | 91.00% | 9.00% |
| Temperate Japonica | 335 | 17.31% | 82.69% |
| Tropical Japonica | 94 | 59.57% | 40.43% |
| Japonica Intermediate | 68 | 52.94% | 47.06% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1105746733 | A->G | INTERGENIC | None |