Detailed information of SNP:
|
SNP ID:
sf1105765379(Gbrowse)
Chromosome: chr11 Position: 5765379 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 60.00% | 40.00% |
| All Indica | 796 | 89.70% | 10.30% |
| All Japonica | 496 | 7.66% | 92.34% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 373 | 84.72% | 15.28% |
| Indica II | 212 | 97.17% | 2.83% |
| Indica Intermediate | 211 | 91.00% | 9.00% |
| Temperate Japonica | 335 | 5.37% | 94.63% |
| Tropical Japonica | 94 | 10.64% | 89.36% |
| Japonica Intermediate | 67 | 14.93% | 85.07% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1105765379 | G->A | INTERGENIC | None |