Detailed information of SNP:
|
SNP ID:
sf1105766581(Gbrowse)
Chromosome: chr11 Position: 5766581 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1351 | 82.75% | 17.25% |
| All Indica | 747 | 73.90% | 26.10% |
| All Japonica | 492 | 99.39% | 0.61% |
| Aus | 60 | 68.33% | 31.67% |
| Indica I | 355 | 78.87% | 21.13% |
| Indica II | 196 | 71.43% | 28.57% |
| Indica Intermediate | 196 | 67.35% | 32.65% |
| Temperate Japonica | 334 | 99.10% | 0.90% |
| Tropical Japonica | 91 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 38 | 84.21% | 15.79% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1105766581 | C->T | LOC_Os11g10530(LOC_Os11g10530.2) | Non-Synonymous SNP |
| sf1105766581 | C->T | LOC_Os11g10530(LOC_Os11g10530.1) | Non-Synonymous SNP |