Detailed information of SNP:
|
SNP ID:
sf1105766938(Gbrowse)
Chromosome: chr11 Position: 5766938 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1224 | 76.06% | 23.94% |
| All Indica | 644 | 60.87% | 39.13% |
| All Japonica | 478 | 98.95% | 1.05% |
| Aus | 56 | 66.07% | 33.93% |
| Indica I | 300 | 63.00% | 37.00% |
| Indica II | 171 | 61.99% | 38.01% |
| Indica Intermediate | 173 | 56.07% | 43.93% |
| Temperate Japonica | 333 | 99.40% | 0.60% |
| Tropical Japonica | 85 | 98.82% | 1.18% |
| Japonica Intermediate | 60 | 96.67% | 3.33% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 32 | 78.12% | 21.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1105766938 | C->T | LOC_Os11g10530(LOC_Os11g10530.2) | INTRON |
| sf1105766938 | C->T | LOC_Os11g10530(LOC_Os11g10530.1) | INTRON |