Detailed information of SNP:
|
SNP ID:
sf1105784561(Gbrowse)
Chromosome: chr11 Position: 5784561 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1410 | 97.52% | 2.48% |
| All Indica | 791 | 96.46% | 3.54% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 371 | 95.96% | 4.04% |
| Indica II | 212 | 98.11% | 1.89% |
| Indica Intermediate | 208 | 95.67% | 4.33% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1105784561 | A->G | INTERGENIC | None |