Detailed information of SNP:
|
SNP ID:
sf1105790784(Gbrowse)
Chromosome: chr11 Position: 5790784 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 90.66% | 9.34% |
| All Indica | 798 | 99.75% | 0.25% |
| All Japonica | 493 | 75.46% | 24.54% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 374 | 99.47% | 0.53% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 80.90% | 19.10% |
| Tropical Japonica | 91 | 69.23% | 30.77% |
| Japonica Intermediate | 67 | 56.72% | 43.28% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1105790784 | A->T | INTERGENIC | None |