Detailed information of SNP:



SNP ID: sf1105790784(Gbrowse)

Chromosome: chr11

Position: 5790784
Major allele: A

Minor allele: T

Reference allele: A

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of A(major allele)Frequency of T(minor allele)
All1413 90.66% 9.34%
All Indica798 99.75% 0.25%
All Japonica493 75.46% 24.54%
Aus67 97.01% 2.99%
Indica I374 99.47% 0.53%
Indica II213 100.00% 0.00%
Indica Intermediate211 100.00% 0.00%
Temperate Japonica335 80.90% 19.10%
Tropical Japonica91 69.23% 30.77%
Japonica Intermediate67 56.72% 43.28%
Group VI/Aromatic14 100.00% 0.00%
Intermediate41 82.93% 17.07%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1105790784 A->T INTERGENIC None