Detailed information of SNP:
|
SNP ID:
sf1105800479(Gbrowse)
Chromosome: chr11 Position: 5800479 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1381 | 93.05% | 6.95% |
| All Indica | 765 | 88.63% | 11.37% |
| All Japonica | 494 | 98.99% | 1.01% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 363 | 97.25% | 2.75% |
| Indica II | 196 | 70.41% | 29.59% |
| Indica Intermediate | 206 | 90.78% | 9.22% |
| Temperate Japonica | 333 | 99.40% | 0.60% |
| Tropical Japonica | 93 | 96.77% | 3.23% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1105800479 | C->T | LOC_Os11g10580(LOC_Os11g10580.1) | Non-Synonymous SNP |