Detailed information of SNP:
|
SNP ID:
sf1105809470(Gbrowse)
Chromosome: chr11 Position: 5809470 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1382 | 88.57% | 11.43% |
| All Indica | 770 | 81.04% | 18.96% |
| All Japonica | 494 | 98.18% | 1.82% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 369 | 91.87% | 8.13% |
| Indica II | 199 | 58.29% | 41.71% |
| Indica Intermediate | 202 | 83.66% | 16.34% |
| Temperate Japonica | 332 | 98.19% | 1.81% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 37 | 91.89% | 8.11% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1105809470 | C->T | LOC_Os11g10600(LOC_Os11g10600.1) | Non-Synonymous SNP |