Detailed information of SNP:
|
SNP ID:
sf1105843041(Gbrowse)
Chromosome: chr11 Position: 5843041 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 90.32% | 9.68% |
| All Indica | 796 | 88.94% | 11.06% |
| All Japonica | 497 | 95.98% | 4.02% |
| Aus | 67 | 62.69% | 37.31% |
| Indica I | 373 | 92.76% | 7.24% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 210 | 75.71% | 24.29% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1105843041 | G->T | INTERGENIC | None |