Detailed information of SNP:
|
SNP ID:
sf1105845172(Gbrowse)
Chromosome: chr11 Position: 5845172 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1273 | 52.00% | 48.00% |
| All Indica | 656 | 27.90% | 72.10% |
| All Japonica | 495 | 92.12% | 7.88% |
| Aus | 67 | 7.46% | 92.54% |
| Indica I | 284 | 17.61% | 82.39% |
| Indica II | 199 | 48.74% | 51.26% |
| Indica Intermediate | 173 | 20.81% | 79.19% |
| Temperate Japonica | 333 | 97.30% | 2.70% |
| Tropical Japonica | 94 | 79.79% | 20.21% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 43.90% | 56.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1105845172 | A->G | INTERGENIC | None |