Detailed information of SNP:
|
SNP ID:
sf1105845891(Gbrowse)
Chromosome: chr11 Position: 5845891 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 91.18% | 8.82% |
| All Indica | 798 | 89.85% | 10.15% |
| All Japonica | 497 | 97.18% | 2.82% |
| Aus | 67 | 61.19% | 38.81% |
| Indica I | 375 | 92.53% | 7.47% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 210 | 81.43% | 18.57% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1105845891 | A->G | INTERGENIC | None |