Detailed information of SNP:
|
SNP ID:
sf1105846361(Gbrowse)
Chromosome: chr11 Position: 5846361 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1382 | 94.79% | 5.21% |
| All Indica | 798 | 91.73% | 8.27% |
| All Japonica | 485 | 99.59% | 0.41% |
| Aus | 46 | 91.30% | 8.70% |
| Indica I | 375 | 93.07% | 6.93% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 210 | 83.81% | 16.19% |
| Temperate Japonica | 329 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 62 | 98.39% | 1.61% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1105846361 | A->G | INTERGENIC | None |