Detailed information of SNP:
|
SNP ID:
sf1105861068(Gbrowse)
Chromosome: chr11 Position: 5861068 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 91.96% | 8.04% |
| All Indica | 799 | 97.50% | 2.50% |
| All Japonica | 497 | 93.56% | 6.44% |
| Aus | 66 | 16.67% | 83.33% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 335 | 94.93% | 5.07% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1105861068 | A->T | LOC_Os11g10690(LOC_Os11g10690.1) | INTRON |