Detailed information of SNP:
|
SNP ID:
sf1105876164(Gbrowse)
Chromosome: chr11 Position: 5876164 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 95.42% | 4.58% |
| All Indica | 799 | 98.62% | 1.38% |
| All Japonica | 497 | 95.37% | 4.63% |
| Aus | 67 | 58.21% | 41.79% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 85.11% | 14.89% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1105876164 | C->G | LOC_Os11g10710(LOC_Os11g10710.1) | INTRON |