Detailed information of SNP:
|
SNP ID:
sf1105896340(Gbrowse)
Chromosome: chr11 Position: 5896340 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 87.24% | 12.76% |
| All Indica | 798 | 82.33% | 17.67% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 53.73% | 46.27% |
| Indica I | 374 | 69.79% | 30.21% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 211 | 93.36% | 6.64% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1105896340 | T->G | LOC_Os11g10750(LOC_Os11g10750.1) | INTRON |