Detailed information of SNP:
|
SNP ID:
sf1105901886(Gbrowse)
Chromosome: chr11 Position: 5901886 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1407 | 88.49% | 11.51% |
| All Indica | 788 | 84.14% | 15.86% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 66 | 56.06% | 43.94% |
| Indica I | 365 | 72.05% | 27.95% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 210 | 93.81% | 6.19% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1105901886 | G->T | INTERGENIC | None |