Detailed information of SNP:
|
SNP ID:
sf1105902316(Gbrowse)
Chromosome: chr11 Position: 5902316 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 84.60% | 15.40% |
| All Indica | 799 | 74.34% | 25.66% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 64 | 92.19% | 7.81% |
| Indica I | 375 | 61.33% | 38.67% |
| Indica II | 213 | 92.49% | 7.51% |
| Indica Intermediate | 211 | 79.15% | 20.85% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1105902316 | G->A | INTERGENIC | None |