Detailed information of SNP:
|
SNP ID:
sf1105903236(Gbrowse)
Chromosome: chr11 Position: 5903236 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1367 | 83.98% | 16.02% |
| All Indica | 750 | 72.80% | 27.20% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 66 | 89.39% | 10.61% |
| Indica I | 373 | 61.93% | 38.07% |
| Indica II | 180 | 90.56% | 9.44% |
| Indica Intermediate | 197 | 77.16% | 22.84% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 85.00% | 15.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1105903236 | T->C | INTERGENIC | None |