Detailed information of SNP:
|
SNP ID:
sf1105906997(Gbrowse)
Chromosome: chr11 Position: 5906997 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 69.87% | 30.13% |
| All Indica | 799 | 97.75% | 2.25% |
| All Japonica | 497 | 25.15% | 74.85% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 30.75% | 69.25% |
| Tropical Japonica | 94 | 11.70% | 88.30% |
| Japonica Intermediate | 68 | 16.18% | 83.82% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 55.00% | 45.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1105906997 | T->C | LOC_Os11g10760(LOC_Os11g10760.1) | Synonymous |