Detailed information of SNP:
|
SNP ID:
sf1105917224(Gbrowse)
Chromosome: chr11 Position: 5917224 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1413 | 86.20% | 13.80% |
| All Indica | 793 | 77.30% | 22.70% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 369 | 63.96% | 36.04% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 211 | 83.89% | 16.11% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1105917224 | A->G | INTERGENIC | None |