Detailed information of SNP:
|
SNP ID:
sf1105920806(Gbrowse)
Chromosome: chr11 Position: 5920806 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 86.08% | 13.92% |
| All Indica | 795 | 77.23% | 22.77% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 372 | 64.25% | 35.75% |
| Indica II | 212 | 93.40% | 6.60% |
| Indica Intermediate | 211 | 83.89% | 16.11% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1105920806 | T->C | INTERGENIC | None |