Detailed information of SNP:
|
SNP ID:
sf1105923686(Gbrowse)
Chromosome: chr11 Position: 5923686 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 63.21% | 36.79% |
| All Indica | 799 | 89.99% | 10.01% |
| All Japonica | 497 | 19.52% | 80.48% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 375 | 95.20% | 4.80% |
| Indica II | 213 | 89.67% | 10.33% |
| Indica Intermediate | 211 | 81.04% | 18.96% |
| Temperate Japonica | 335 | 25.37% | 74.63% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 11.76% | 88.24% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1105923686 | G->A | INTERGENIC | None |