Detailed information of SNP:
|
SNP ID:
sf1105926658(Gbrowse)
Chromosome: chr11 Position: 5926658 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1309 | 89.84% | 10.16% |
| All Indica | 798 | 99.37% | 0.63% |
| All Japonica | 396 | 68.43% | 31.57% |
| Aus | 64 | 100.00% | 0.00% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 210 | 99.05% | 0.95% |
| Temperate Japonica | 270 | 60.37% | 39.63% |
| Tropical Japonica | 72 | 94.44% | 5.56% |
| Japonica Intermediate | 54 | 74.07% | 25.93% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 37 | 91.89% | 8.11% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1105926658 | T->C | INTERGENIC | None |