Detailed information of SNP:
|
SNP ID:
sf1105940947(Gbrowse)
Chromosome: chr11 Position: 5940947 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1387 | 79.31% | 20.69% |
| All Indica | 775 | 67.23% | 32.77% |
| All Japonica | 495 | 99.80% | 0.20% |
| Aus | 62 | 61.29% | 38.71% |
| Indica I | 364 | 74.45% | 25.55% |
| Indica II | 209 | 50.24% | 49.76% |
| Indica Intermediate | 202 | 71.78% | 28.22% |
| Temperate Japonica | 333 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1105940947 | G->A | INTERGENIC | None |