Detailed information of SNP:
|
SNP ID:
sf1105963326(Gbrowse)
Chromosome: chr11 Position: 5963326 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1365 | 75.24% | 24.76% |
| All Indica | 756 | 61.38% | 38.62% |
| All Japonica | 494 | 95.55% | 4.45% |
| Aus | 61 | 80.33% | 19.67% |
| Indica I | 351 | 67.24% | 32.76% |
| Indica II | 204 | 56.37% | 43.63% |
| Indica Intermediate | 201 | 56.22% | 43.78% |
| Temperate Japonica | 332 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 82.98% | 17.02% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 40 | 75.00% | 25.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1105963326 | T->C | LOC_Os11g10820(LOC_Os11g10820.1) | Non-Synonymous SNP |