Detailed information of SNP:
|
SNP ID:
sf1106018861(Gbrowse)
Chromosome: chr11 Position: 6018861 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1355 | 74.76% | 25.24% |
| All Indica | 753 | 59.10% | 40.90% |
| All Japonica | 484 | 97.93% | 2.07% |
| Aus | 62 | 77.42% | 22.58% |
| Indica I | 350 | 45.43% | 54.57% |
| Indica II | 208 | 76.92% | 23.08% |
| Indica Intermediate | 195 | 64.62% | 35.38% |
| Temperate Japonica | 323 | 96.90% | 3.10% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1106018861 | A->G | LOC_Os11g10910(LOC_Os11g10910.1) | INTRON |