Detailed information of SNP:
|
SNP ID:
sf1106165173(Gbrowse)
Chromosome: chr11 Position: 6165173 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1402 | 95.29% | 4.71% |
| All Indica | 788 | 93.40% | 6.60% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 62 | 80.65% | 19.35% |
| Indica I | 367 | 92.92% | 7.08% |
| Indica II | 212 | 95.75% | 4.25% |
| Indica Intermediate | 209 | 91.87% | 8.13% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1106165173 | C->T | LOC_Os11g11150(LOC_Os11g11150.1) | Synonymous |