Detailed information of SNP:
|
SNP ID:
sf1106182163(Gbrowse)
Chromosome: chr11 Position: 6182163 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1385 | 88.81% | 11.19% |
| All Indica | 766 | 81.46% | 18.54% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 356 | 76.12% | 23.88% |
| Indica II | 205 | 85.37% | 14.63% |
| Indica Intermediate | 205 | 86.83% | 13.17% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1106182163 | G->A | INTERGENIC | None |