Detailed information of SNP:
|
SNP ID:
sf1106193500(Gbrowse)
Chromosome: chr11 Position: 6193500 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1406 | 93.67% | 6.33% |
| All Indica | 799 | 99.50% | 0.50% |
| All Japonica | 485 | 85.77% | 14.23% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 328 | 89.02% | 10.98% |
| Tropical Japonica | 93 | 84.95% | 15.05% |
| Japonica Intermediate | 64 | 70.31% | 29.69% |
| Group VI/Aromatic | 13 | 7.69% | 92.31% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1106193500 | G->A | INTERGENIC | None |