Detailed information of SNP:
|
SNP ID:
sf1106195029(Gbrowse)
Chromosome: chr11 Position: 6195029 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 92.46% | 7.54% |
| All Indica | 799 | 90.49% | 9.51% |
| All Japonica | 497 | 94.77% | 5.23% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 91.47% | 8.53% |
| Indica II | 213 | 91.08% | 8.92% |
| Indica Intermediate | 211 | 88.15% | 11.85% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 94 | 84.04% | 15.96% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1106195029 | T->C | INTERGENIC | None |