Detailed information of SNP:
|
SNP ID:
sf1106206624(Gbrowse)
Chromosome: chr11 Position: 6206624 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1410 | 96.24% | 3.76% |
| All Indica | 793 | 94.96% | 5.04% |
| All Japonica | 495 | 97.98% | 2.02% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 95.99% | 4.01% |
| Indica II | 209 | 95.69% | 4.31% |
| Indica Intermediate | 210 | 92.38% | 7.62% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 92 | 90.22% | 9.78% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1106206624 | G->A | LOC_Os11g11220(LOC_Os11g11220.1) | Non-Synonymous SNP |