Detailed information of SNP:
|
SNP ID:
sf1106326147(Gbrowse)
Chromosome: chr11 Position: 6326147 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 88.12% | 11.88% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 492 | 67.07% | 32.93% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 331 | 69.18% | 30.82% |
| Tropical Japonica | 94 | 71.28% | 28.72% |
| Japonica Intermediate | 67 | 50.75% | 49.25% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1106326147 | G->A | INTERGENIC | None |