Detailed information of SNP:
|
SNP ID:
sf1106371518(Gbrowse)
Chromosome: chr11 Position: 6371518 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 57.07% | 42.93% |
| All Indica | 795 | 81.26% | 18.74% |
| All Japonica | 496 | 13.71% | 86.29% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 91.40% | 8.60% |
| Indica II | 212 | 58.49% | 41.51% |
| Indica Intermediate | 211 | 86.26% | 13.74% |
| Temperate Japonica | 334 | 9.88% | 90.12% |
| Tropical Japonica | 94 | 26.60% | 73.40% |
| Japonica Intermediate | 68 | 14.71% | 85.29% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1106371518 | T->C | INTERGENIC | None |