Detailed information of SNP:
|
SNP ID:
sf1106404564(Gbrowse)
Chromosome: chr11 Position: 6404564 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 53.84% | 46.16% |
| All Indica | 799 | 30.29% | 69.71% |
| All Japonica | 497 | 92.56% | 7.44% |
| Aus | 67 | 31.34% | 68.66% |
| Indica I | 375 | 38.13% | 61.87% |
| Indica II | 213 | 23.94% | 76.06% |
| Indica Intermediate | 211 | 22.75% | 77.25% |
| Temperate Japonica | 335 | 95.82% | 4.18% |
| Tropical Japonica | 94 | 84.04% | 15.96% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1106404564 | C->T | INTERGENIC | None |