Detailed information of SNP:
|
SNP ID:
sf1106421142(Gbrowse)
Chromosome: chr11 Position: 6421142 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1403 | 95.01% | 4.99% |
| All Indica | 790 | 96.96% | 3.04% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 63 | 31.75% | 68.25% |
| Indica I | 372 | 95.70% | 4.30% |
| Indica II | 211 | 98.58% | 1.42% |
| Indica Intermediate | 207 | 97.58% | 2.42% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1106421142 | G->A | INTERGENIC | None |