Detailed information of SNP:
|
SNP ID:
sf1106467198(Gbrowse)
Chromosome: chr11 Position: 6467198 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1409 | 59.55% | 40.45% |
| All Indica | 796 | 94.85% | 5.15% |
| All Japonica | 491 | 10.79% | 89.21% |
| Aus | 66 | 12.12% | 87.88% |
| Indica I | 373 | 95.17% | 4.83% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 210 | 90.00% | 10.00% |
| Temperate Japonica | 330 | 7.27% | 92.73% |
| Tropical Japonica | 93 | 19.35% | 80.65% |
| Japonica Intermediate | 68 | 16.18% | 83.82% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1106467198 | G->C | INTERGENIC | None |