Detailed information of SNP:
|
SNP ID:
sf1106477395(Gbrowse)
Chromosome: chr11 Position: 6477395 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 95.04% | 4.96% |
| All Indica | 792 | 98.23% | 1.77% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 16.67% | 83.33% |
| Indica I | 370 | 98.38% | 1.62% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 209 | 96.65% | 3.35% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1106477395 | C->T | LOC_Os11g11660(LOC_Os11g11660.1) | Synonymous |