Detailed information of SNP:
|
SNP ID:
sf1106498310(Gbrowse)
Chromosome: chr11 Position: 6498310 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 55.72% | 44.28% |
| All Indica | 798 | 28.32% | 71.68% |
| All Japonica | 496 | 96.77% | 3.23% |
| Aus | 66 | 78.79% | 21.21% |
| Indica I | 375 | 22.67% | 77.33% |
| Indica II | 212 | 26.89% | 73.11% |
| Indica Intermediate | 211 | 39.81% | 60.19% |
| Temperate Japonica | 334 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 89.36% | 10.64% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1106498310 | A->C | LOC_Os11g11694(LOC_Os11g11694.1) | UTR_5_PRIME |