Detailed information of SNP:
|
SNP ID:
sf1106548139(Gbrowse)
Chromosome: chr11 Position: 6548139 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1336 | 68.41% | 31.59% |
| All Indica | 744 | 78.63% | 21.37% |
| All Japonica | 475 | 49.68% | 50.32% |
| Aus | 64 | 92.19% | 7.81% |
| Indica I | 350 | 78.00% | 22.00% |
| Indica II | 197 | 82.23% | 17.77% |
| Indica Intermediate | 197 | 76.14% | 23.86% |
| Temperate Japonica | 321 | 47.66% | 52.34% |
| Tropical Japonica | 90 | 54.44% | 45.56% |
| Japonica Intermediate | 64 | 53.12% | 46.88% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 39 | 71.79% | 28.21% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1106548139 | A->G | INTERGENIC | None |