Detailed information of SNP:
|
SNP ID:
sf1106548438(Gbrowse)
Chromosome: chr11 Position: 6548438 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1366 | 75.70% | 24.30% |
| All Indica | 764 | 87.30% | 12.70% |
| All Japonica | 482 | 54.77% | 45.23% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 358 | 86.31% | 13.69% |
| Indica II | 203 | 93.60% | 6.40% |
| Indica Intermediate | 203 | 82.76% | 17.24% |
| Temperate Japonica | 323 | 52.94% | 47.06% |
| Tropical Japonica | 92 | 58.70% | 41.30% |
| Japonica Intermediate | 67 | 58.21% | 41.79% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 40 | 80.00% | 20.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1106548438 | A->G | INTERGENIC | None |