Detailed information of SNP:
|
SNP ID:
sf1106548510(Gbrowse)
Chromosome: chr11 Position: 6548510 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1363 | 74.61% | 25.39% |
| All Indica | 763 | 87.16% | 12.84% |
| All Japonica | 481 | 52.60% | 47.40% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 358 | 86.03% | 13.97% |
| Indica II | 202 | 93.56% | 6.44% |
| Indica Intermediate | 203 | 82.76% | 17.24% |
| Temperate Japonica | 322 | 50.31% | 49.69% |
| Tropical Japonica | 91 | 58.24% | 41.76% |
| Japonica Intermediate | 68 | 55.88% | 44.12% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 39 | 76.92% | 23.08% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1106548510 | T->C | INTERGENIC | None |