Detailed information of SNP:
|
SNP ID:
sf1106561132(Gbrowse)
Chromosome: chr11 Position: 6561132 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1403 | 86.17% | 13.83% |
| All Indica | 786 | 76.21% | 23.79% |
| All Japonica | 495 | 98.79% | 1.21% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 366 | 70.22% | 29.78% |
| Indica II | 211 | 93.84% | 6.16% |
| Indica Intermediate | 209 | 68.90% | 31.10% |
| Temperate Japonica | 334 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1106561132 | A->G | LOC_Os11g11820(LOC_Os11g11820.1) | Synonymous |