Detailed information of SNP:
|
SNP ID:
sf1106561826(Gbrowse)
Chromosome: chr11 Position: 6561826 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1331 | 75.21% | 24.79% |
| All Indica | 716 | 55.73% | 44.27% |
| All Japonica | 496 | 99.60% | 0.40% |
| Aus | 65 | 89.23% | 10.77% |
| Indica I | 332 | 61.45% | 38.55% |
| Indica II | 198 | 52.53% | 47.47% |
| Indica Intermediate | 186 | 48.92% | 51.08% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 90.00% | 10.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1106561826 | G->A | LOC_Os11g11820(LOC_Os11g11820.1) | Non-Synonymous SNP |