Detailed information of SNP:
|
SNP ID:
sf1106565468(Gbrowse)
Chromosome: chr11 Position: 6565468 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1372 | 76.53% | 23.47% |
| All Indica | 762 | 88.06% | 11.94% |
| All Japonica | 488 | 56.35% | 43.65% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 351 | 88.89% | 11.11% |
| Indica II | 209 | 92.34% | 7.66% |
| Indica Intermediate | 202 | 82.18% | 17.82% |
| Temperate Japonica | 329 | 55.02% | 44.98% |
| Tropical Japonica | 92 | 60.87% | 39.13% |
| Japonica Intermediate | 67 | 56.72% | 43.28% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1106565468 | T->C | INTERGENIC | None |