Detailed information of SNP:
|
SNP ID:
sf1106567337(Gbrowse)
Chromosome: chr11 Position: 6567337 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1353 | 66.52% | 33.48% |
| All Indica | 743 | 76.58% | 23.42% |
| All Japonica | 489 | 47.85% | 52.15% |
| Aus | 66 | 89.39% | 10.61% |
| Indica I | 344 | 73.55% | 26.45% |
| Indica II | 204 | 84.80% | 15.20% |
| Indica Intermediate | 195 | 73.33% | 26.67% |
| Temperate Japonica | 330 | 46.36% | 53.64% |
| Tropical Japonica | 92 | 53.26% | 46.74% |
| Japonica Intermediate | 67 | 47.76% | 52.24% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1106567337 | C->T | INTERGENIC | None |