Detailed information of SNP:
|
SNP ID:
sf1106568393(Gbrowse)
Chromosome: chr11 Position: 6568393 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1407 | 83.01% | 16.99% |
| All Indica | 789 | 90.11% | 9.89% |
| All Japonica | 497 | 69.82% | 30.18% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 368 | 86.96% | 13.04% |
| Indica II | 212 | 94.34% | 5.66% |
| Indica Intermediate | 209 | 91.39% | 8.61% |
| Temperate Japonica | 335 | 70.15% | 29.85% |
| Tropical Japonica | 94 | 65.96% | 34.04% |
| Japonica Intermediate | 68 | 73.53% | 26.47% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1106568393 | G->A | LOC_Os11g11840(LOC_Os11g11840.1) | Non-Synonymous SNP |