Detailed information of SNP:
|
SNP ID:
sf1106615763(Gbrowse)
Chromosome: chr11 Position: 6615763 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1380 | 52.68% | 47.32% |
| All Indica | 763 | 81.65% | 18.35% |
| All Japonica | 495 | 5.45% | 94.55% |
| Aus | 67 | 80.60% | 19.40% |
| Indica I | 353 | 80.45% | 19.55% |
| Indica II | 205 | 86.34% | 13.66% |
| Indica Intermediate | 205 | 79.02% | 20.98% |
| Temperate Japonica | 334 | 5.09% | 94.91% |
| Tropical Japonica | 93 | 5.38% | 94.62% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1106615763 | T->C | INTERGENIC | None |